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LOC100845881 exopolygalacturonase [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100845881, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100845881
Gene description
exopolygalacturonase
Locus tag
BRADI_1g40990v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100845881 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (37702801..37704542, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (37696239..37697712, complement)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene calmodulin-binding receptor kinase CaMRLK Neighboring gene uncharacterized LOC106865780 Neighboring gene O-fucosyltransferase 8 Neighboring gene 50S ribosomal protein L1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exopolygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    37702801..37704542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003563791.3 → XP_003563839.1  exopolygalacturonase

    UniProtKB/TrEMBL
    I1GYF0
    Conserved Domains (2) summary
    pfam00295
    Location:87 → 417
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:52 → 414
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein Strain
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