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LOC100845585 probable pectinesterase 53 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100845585, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100845585
Gene description
probable pectinesterase 53
Locus tag
BRADI_2g49500v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100845585 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (49350270..49360067, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (49604695..49614412, complement)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100824998 Neighboring gene protein IQ-DOMAIN 14 Neighboring gene probable glutamate carboxypeptidase LAMP1 Neighboring gene tryptophan--tRNA ligase, chloroplastic/mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectinesterase 53

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    49350270..49360067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024458238.1 → XP_024314006.1  probable pectinesterase 53 isoform X2

    UniProtKB/TrEMBL
    A0A2K2DEV6
    Conserved Domains (1) summary
    cl27601
    Location:5 → 269
    Pectinesterase

  2. XM_003567056.4 → XP_003567104.1  probable pectinesterase 53 isoform X1

    UniProtKB/TrEMBL
    I1HRF4
    Conserved Domains (1) summary
    PLN02682
    Location:2 → 389
    PLN02682; pectinesterase family protein
Nucleotide Protein Strain
Heading Accession and Version

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