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LOC100845388 probable beta-1,3-galactosyltransferase 8 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100845388, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100845388
Gene description
probable beta-1,3-galactosyltransferase 8
Locus tag
BRADI_2g24700v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100845388 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (22494932..22498175)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (22488094..22491351)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene dnaJ protein homolog 1 Neighboring gene calphotin-like Neighboring gene splicing regulator RBM11 Neighboring gene uncharacterized LOC100826433 Neighboring gene 2-oxoglutarate-dependent dioxygenase DAO-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    22494932..22498175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014899454.2 → XP_014754940.1  probable beta-1,3-galactosyltransferase 8 isoform X3

    UniProtKB/TrEMBL
    A0A2K2DA93
    Conserved Domains (3) summary
    PLN03193
    Location:1 → 405
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:2 → 98
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:129 → 327
    Galactosyl_T; Galactosyltransferase

  2. XM_024459260.1 → XP_024315028.1  probable beta-1,3-galactosyltransferase 8 isoform X1

    UniProtKB/TrEMBL
    A0A2K2DA93
    Conserved Domains (1) summary
    cl26217
    Location:21 → 425
    DUF4094; Domain of unknown function (DUF4094)

  3. XM_010233044.3 → XP_010231346.1  probable beta-1,3-galactosyltransferase 8 isoform X4

    UniProtKB/TrEMBL
    A0A2K2DA93, I1HJ66
    Conserved Domains (3) summary
    PLN03193
    Location:21 → 401
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:22 → 118
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:149 → 347
    Galactosyl_T; Galactosyltransferase

  4. XM_024459261.1 → XP_024315029.1  probable beta-1,3-galactosyltransferase 8 isoform X2

    UniProtKB/TrEMBL
    A0A2K2DA93
    Conserved Domains (1) summary
    cl26217
    Location:21 → 424
    DUF4094; Domain of unknown function (DUF4094)
Nucleotide Protein Strain
Heading Accession and Version

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