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LOC100843814 cellulose synthase A catalytic subunit 9 [UDP-forming] [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100843814, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100843814
Gene description
cellulose synthase A catalytic subunit 9 [UDP-forming]
Locus tag
BRADI_4g30540v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100843814 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (36193556..36198082)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (36375643..36380123)

Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH149-like Neighboring gene uncharacterized LOC106866609 Neighboring gene QWRF motif-containing protein 4 Neighboring gene putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 9 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    36193556..36198082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003578089.4 → XP_003578137.1  cellulose synthase A catalytic subunit 9 [UDP-forming]

    UniProtKB/TrEMBL
    I1IQ78
    Conserved Domains (1) summary
    cl28038
    Location:1 → 1051
    Cellulose_synt; Cellulose synthase
Nucleotide Protein Strain
Heading Accession and Version

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