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LOC100842542 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100842542, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100842542
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
Locus tag
BRADI_2g58616v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100842542 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
28
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (56227206..56236823, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (56482236..56491230, complement)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100838073 Neighboring gene cysteine proteinase inhibitor 4 Neighboring gene uncharacterized LOC112270771 Neighboring gene transcription factor bHLH77

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    56227206..56236823 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014898215.2 → XP_014753701.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X2

    UniProtKB/TrEMBL
    A0A0Q3KJ58, A0A2K2DGP8
    Conserved Domains (3) summary
    sd00006
    Location:254 → 282
    TPR; TPR repeat [structural motif]
    cl10013
    Location:589 → 948
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    cl26002
    Location:31 → 498
    TPR_11; TPR repeat

  2. XM_010235278.3 → XP_010233580.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X1

    UniProtKB/TrEMBL
    A0A0Q3GL56, A0A0Q3KJ58
    Conserved Domains (7) summary
    COG0457
    Location:180 → 472
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:256 → 284
    TPR; TPR repeat [structural motif]
    cd15832
    Location:143 → 201
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:395 → 424
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:124 → 185
    TPR_11; TPR repeat
    cl10013
    Location:591 → 951
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    cl24038
    Location:126 → 327
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  3. XM_014898216.2 → XP_014753702.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X3

    UniProtKB/TrEMBL
    A0A0Q3IZQ1
    Conserved Domains (7) summary
    COG0457
    Location:101 → 393
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:177 → 205
    TPR; TPR repeat [structural motif]
    cd15832
    Location:64 → 122
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:316 → 345
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:45 → 106
    TPR_11; TPR repeat
    cl10013
    Location:512 → 872
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...
    cl24038
    Location:47 → 248
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
Nucleotide Protein Strain
Heading Accession and Version

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