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LOC100841174 probable galacturonosyltransferase 4 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100841174, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100841174
Gene description
probable galacturonosyltransferase 4
Locus tag
BRADI_4g33280v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100841174 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (38904933..38908823)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (39087354..39091071)

Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g24000, mitochondrial Neighboring gene uncharacterized LOC104584694 Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC100841685

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    38904933..38908823
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003578250.4 → XP_003578298.1  probable galacturonosyltransferase 4

    UniProtKB/TrEMBL
    I1IR43
    Conserved Domains (2) summary
    cd06429
    Location:389 → 683
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02829
    Location:68 → 696
    PLN02829; Probable galacturonosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases