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LOC100840183 probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100840183, updated on 18-Sep-2024

Summary

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Gene symbol
LOC100840183
Gene description
probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial
Locus tag
BRADI_1g69490v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100840183 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (68219178..68224390, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (68276150..68281345, complement)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100821645 Neighboring gene two-component response regulator ORR21 Neighboring gene kinesin light chain 3 Neighboring gene nuclear pore complex protein NUP155

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in lipid A biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial
Names
probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    68219178..68224390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014899006.2 → XP_014754492.1  probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A0Q3HJE7
    Conserved Domains (1) summary
    pfam03331
    Location:25 → 274
    LpxC; UDP-3-O-acyl N-acetylglycosamine deacetylase

  2. XM_003561827.4 → XP_003561875.1  probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial isoform X1

    UniProtKB/TrEMBL
    I1H7X5
    Conserved Domains (1) summary
    pfam03331
    Location:25 → 307
    LpxC; UDP-3-O-acyl N-acetylglycosamine deacetylase

  3. XM_014899007.2 → XP_014754493.1  probable UDP-3-O-acyl-N-acetylglucosamine deacetylase 2, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A2K2DU97
    Conserved Domains (1) summary
    pfam03331
    Location:3 → 203
    LpxC; UDP-3-O-acyl N-acetylglycosamine deacetylase
Nucleotide Protein Strain
Heading Accession and Version

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