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LOC100838005 xyloglucan galactosyltransferase KATAMARI1 homolog [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100838005, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100838005
Gene description
xyloglucan galactosyltransferase KATAMARI1 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100838005 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (29098582..29100286, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (29400110..29401567, complement)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene uncharacterized LOC100825429

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan galactosyltransferase KATAMARI1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    29098582..29100286 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010238302.2 → XP_010236604.1  xyloglucan galactosyltransferase KATAMARI1 homolog

    UniProtKB/TrEMBL
    I1I4G5
    Conserved Domains (1) summary
    pfam03016
    Location:60 → 411
    Exostosin; Exostosin family
Nucleotide Protein Strain
Heading Accession and Version

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