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LOC100837556 pectinesterase [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100837556, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100837556
Gene description
pectinesterase
Locus tag
BRADI_2g09090v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100837556 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (7401565..7404001, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (7401151..7403255, complement)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene protein TPR1 Neighboring gene uncharacterized LOC100836017 Neighboring gene uncharacterized LOC100839083 Neighboring gene uncharacterized LOC100837059

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    7401565..7404001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003566393.4 → XP_003566441.1  pectinesterase

    UniProtKB/TrEMBL
    I1HE03
    Conserved Domains (3) summary
    PLN02506
    Location:55 → 582
    PLN02506; putative pectinesterase/pectinesterase inhibitor
    cd15799
    Location:89 → 232
    PMEI-like_4; plant invertase/pectin methylesterase inhibitor domain-containing protein
    pfam01095
    Location:279 → 567
    Pectinesterase; Pectinesterase
Nucleotide Protein Strain
Heading Accession and Version

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