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LOC100834026 probable mixed-linked glucan synthase 6 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100834026, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100834026
Gene description
probable mixed-linked glucan synthase 6
Locus tag
BRADI_3g16307v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
Also known as
CslF6
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Genomic context

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See LOC100834026 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (14492153..14498422)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (14468922..14475190)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial Neighboring gene alpha/beta hydrolase domain-containing protein 17C Neighboring gene probable transcription factor KAN2 Neighboring gene uncharacterized LOC104583557

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The cytoplasmic localization of the catalytic site of CSLF6 supports a channeling model for the biosynthesis of mixed-linkage glucan. Kim SJ, et al. Plant J, 2015 Feb. PMID 25557048
  2. Membrane pore architecture of the CslF6 protein controls (1-3,1-4)-β-glucan structure. Jobling SA. Sci Adv, 2015 Jun. PMID 26601199, Free PMC Article
  3. Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources. Mochida K, et al. PLoS One, 2013. PMID 24130698, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable mixed-linked glucan synthase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    14492153..14498422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003573406.4 → XP_003573454.1  probable mixed-linked glucan synthase 6

    See identical proteins and their annotated locations for XP_003573454.1

    UniProtKB/TrEMBL
    I1I1D2
    Conserved Domains (2) summary
    pfam03552
    Location:178 → 910
    Cellulose_synt; Cellulose synthase
    cl11394
    Location:384 → 678
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases