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LOC100833658 callose synthase 3 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100833658, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100833658
Gene description
callose synthase 3
Locus tag
BRADI_1g76617v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100833658 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
43
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (73360744..73379438)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (73409081..73427780)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104581893 Neighboring gene uncharacterized LOC100833354 Neighboring gene fasciclin-like arabinogalactan protein 8 Neighboring gene K(+) efflux antiporter 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    73360744..73379438
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010230970.3 → XP_010229272.1  callose synthase 3

    UniProtKB/TrEMBL
    A0A0Q3HMG4
    Conserved Domains (3) summary
    pfam02364
    Location:1055 → 1805
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:53 → 162
    Vta1; Vta1 like
    pfam14288
    Location:325 → 437
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases