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LOC100831111 exopolygalacturonase [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100831111, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100831111
Gene description
exopolygalacturonase
Locus tag
BRADI_1g36110v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100831111 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (31911108..31912975)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (31911904..31913543)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene exopolygalacturonase Neighboring gene exopolygalacturonase Neighboring gene uncharacterized LOC100826608 Neighboring gene pentatricopeptide repeat-containing protein At1g03540 Neighboring gene UPF0301 protein Cpha266_0885

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exopolygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    31911108..31912975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003563584.3 → XP_003563632.1  exopolygalacturonase

    See identical proteins and their annotated locations for XP_003563632.1

    UniProtKB/TrEMBL
    I1GXC2
    Conserved Domains (2) summary
    pfam00295
    Location:70 → 401
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:42 → 403
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein Strain
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