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LOC100830843 probable galacturonosyltransferase 4 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100830843, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100830843
Gene description
probable galacturonosyltransferase 4
Locus tag
BRADI_3g20550v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100830843 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (19592453..19598563, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (19577037..19583149, complement)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g18520, chloroplastic Neighboring gene exopolygalacturonase Neighboring gene DNA-directed RNA polymerase I subunit rpa43 Neighboring gene subtilisin-like protease SBT5.3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    19592453..19598563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010236281.3 → XP_010234583.1  probable galacturonosyltransferase 4 isoform X2

    UniProtKB/TrEMBL
    I1I2T0
    Conserved Domains (2) summary
    cd06429
    Location:332 → 625
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02829
    Location:17 → 639
    PLN02829; Probable galacturonosyltransferase

  2. XM_003573650.4 → XP_003573698.1  probable galacturonosyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    I1I2S9
    Conserved Domains (2) summary
    cd06429
    Location:353 → 646
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02829
    Location:17 → 660
    PLN02829; Probable galacturonosyltransferase
Nucleotide Protein Strain
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