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LOC100830734 O-fucosyltransferase 3 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100830734, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100830734
Gene description
O-fucosyltransferase 3
Locus tag
BRADI_2g04220v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100830734 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (2952693..2956519)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (2952705..2956519)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene RING finger and transmembrane domain-containing protein 2 Neighboring gene autophagy-related protein 18d Neighboring gene dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system Neighboring gene transfer RNA cysteine (anticodon GCA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
O-fucosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    2952693..2956519
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003569154.3 → XP_003569202.1  O-fucosyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    I1HCD4
    Conserved Domains (2) summary
    cd11299
    Location:81 → 405
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
    pfam10250
    Location:86 → 406
    O-FucT; GDP-fucose protein O-fucosyltransferase

  2. XM_024459344.1 → XP_024315112.1  O-fucosyltransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A0Q3JWN6
    Conserved Domains (1) summary
    cd11299
    Location:1 → 313
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
Nucleotide Protein Strain
Heading Accession and Version

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