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LOC100826426 laccase-8 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100826426, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100826426
Gene description
laccase-8
Locus tag
BRADI_2g55060v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100826426 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (53584998..53587563)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (53839450..53841814)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene transcription factor MYB1 Neighboring gene laccase-7 Neighboring gene uncharacterized LOC112270899 Neighboring gene heme-binding-like protein At3g10130, chloroplastic Neighboring gene fructokinase-like 1, chloroplastic Neighboring gene O-fucosyltransferase 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    53584998..53587563
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003564569.3 → XP_003564617.1  laccase-8

    UniProtKB/TrEMBL
    I1HTF2
    Conserved Domains (4) summary
    cd13849
    Location:26 → 142
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:158 → 306
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    TIGR03389
    Location:21 → 553
    laccase; laccase, plant
    cl19115
    Location:408 → 537
    Cupredoxin; Cupredoxin superfamily
Nucleotide Protein Strain
Heading Accession and Version

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