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LOC100825601 beta-glucosidase BoGH3B [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100825601, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100825601
Gene description
beta-glucosidase BoGH3B
Locus tag
BRADI_2g23720v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100825601 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (21408934..21414425, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (21402075..21407585, complement)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene UPF0503 protein At3g09070, chloroplastic Neighboring gene transcription factor DIVARICATA Neighboring gene coronatine-insensitive protein homolog 1b Neighboring gene uncharacterized acetyltransferase At3g50280

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100825601

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    21408934..21414425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024459440.1 → XP_024315208.1  uncharacterized protein LOC100825601 isoform X1

    Conserved Domains (2) summary
    COG1472
    Location:31 → 489
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
    pfam01915
    Location:424 → 632
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain

  2. XM_003568290.4 → XP_003568338.1  uncharacterized protein LOC100825601 isoform X2

    UniProtKB/TrEMBL
    I1HIW7
    Conserved Domains (3) summary
    COG1472
    Location:31 → 463
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
    pfam01915
    Location:398 → 586
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
    cl07971
    Location:33 → 361
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain

  3. XM_024459441.1 → XP_024315209.1  uncharacterized protein LOC100825601 isoform X3

    Conserved Domains (1) summary
    COG1472
    Location:31 → 376
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
Nucleotide Protein Strain
Heading Accession and Version

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