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LOC100825202 isoamylase 2, chloroplastic [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100825202, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100825202
Gene description
isoamylase 2, chloroplastic
Locus tag
BRADI_2g26170v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100825202 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (24504316..24516452, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (24496875..24509616, complement)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100826023 Neighboring gene uncharacterized LOC112271098 Neighboring gene CSC1-like protein At4g02900 Neighboring gene pentatricopeptide repeat-containing protein At1g09900

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables isoamylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in starch biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isoamylase 2, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    24504316..24516452 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014899311.2 → XP_014754797.1  isoamylase 2, chloroplastic

    UniProtKB/TrEMBL
    A0A0Q3QZ14
    Conserved Domains (3) summary
    TIGR02100
    Location:294 → 937
    glgX_debranch; glycogen debranching enzyme GlgX
    cd02856
    Location:298 → 435
    E_set_GDE_Isoamylase_N; N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme and bacterial isoamylase (also called glycogen 6-glucanohydrolase)
    cd11346
    Location:427 → 822
    AmyAc_plant_IsoA; Alpha amylase catalytic domain family found in plant isoamylases

RNA

  1. XR_002963032.1 RNA Sequence

  2. XR_002963030.1 RNA Sequence

  3. XR_002963031.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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