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LOC100822020 transcription factor bHLH123 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100822020, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100822020
Gene description
transcription factor bHLH123
Locus tag
BRADI_2g51990v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100822020 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (51295097..51297547, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (51549483..51551926, complement)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene receptor-like serine/threonine-protein kinase SD1-8 Neighboring gene uncharacterized LOC104582881 Neighboring gene NAD(P)H dehydrogenase (quinone) FQR1 Neighboring gene probable indole-3-acetic acid-amido synthetase GH3.1 Neighboring gene uncharacterized LOC100822324 Neighboring gene pentatricopeptide repeat-containing protein At1g55890, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH123

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    51295097..51297547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003567141.4 → XP_003567189.1  transcription factor bHLH123

    UniProtKB/TrEMBL
    A0A0Q3N0Q4, A0A2K2DFG3
    Conserved Domains (1) summary
    smart00353
    Location:280 → 325
    HLH; helix loop helix domain
Nucleotide Protein Strain
Heading Accession and Version

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