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LOC100821418 sucrose synthase 7 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100821418, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100821418
Gene description
sucrose synthase 7
Locus tag
BRADI_3g60687v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100821418 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (59320918..59325524)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (59616920..59621934)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene beta-catenin-like protein 1 Neighboring gene paramyosin Neighboring gene uncharacterized LOC106866430 Neighboring gene protein argonaute 1C Neighboring gene probable phospholipase A2 homolog 1 Neighboring gene homoserine kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    59320918..59325524
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003573122.4 → XP_003573170.2  sucrose synthase 7

    UniProtKB/TrEMBL
    A0A0Q3FRQ8, A0A0Q3FRZ4
    Conserved Domains (1) summary
    PLN00142
    Location:80 → 889
    PLN00142; sucrose synthase
Nucleotide Protein Strain
Heading Accession and Version

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