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LOC100821141 beta-glucosidase-like SFR2, chloroplastic [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100821141, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100821141
Gene description
beta-glucosidase-like SFR2, chloroplastic
Locus tag
BRADI_4g09920v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100821141 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (9440161..9444601)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (9435806..9440527)

Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene transcription factor JAMYB Neighboring gene probable pectinesterase 53 Neighboring gene uncharacterized LOC100821439 Neighboring gene splicing factor U2af large subunit B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat. Huo N, et al. Plant Mol Biol, 2009 May. PMID 19184460
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-glucosidase-like SFR2, chloroplastic
Names
beta-glycosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    9440161..9444601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003577183.4 → XP_003577231.1  beta-glucosidase-like SFR2, chloroplastic isoform X1

    See identical proteins and their annotated locations for XP_003577231.1

    UniProtKB/TrEMBL
    C3SAA1
    Conserved Domains (1) summary
    COG2723
    Location:200 → 552
    BglB; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]

  2. XM_024455234.1 → XP_024311002.1  beta-glucosidase-like SFR2, chloroplastic isoform X3

    Conserved Domains (1) summary
    COG2723
    Location:200 → 552
    BglB; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]

  3. XM_010239093.3 → XP_010237395.1  beta-glucosidase-like SFR2, chloroplastic isoform X2

    Conserved Domains (1) summary
    COG2723
    Location:199 → 551
    BglB; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Nucleotide Protein Strain
Heading Accession and Version

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