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LOC100821105 probable cellulose synthase A catalytic subunit 1 [UDP-forming] [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100821105, updated on 9-Nov-2023

Summary

Gene symbol
LOC100821105
Gene description
probable cellulose synthase A catalytic subunit 1 [UDP-forming]
Locus tag
BRADI_2g34240v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

See LOC100821105 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (34048395..34054386)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (34303913..34309689)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene factor of DNA methylation 1 Neighboring gene putative ripening-related protein 6 Neighboring gene uncharacterized LOC100821708 Neighboring gene uncharacterized LOC112270984

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
probable cellulose synthase A catalytic subunit 1 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    34048395..34054386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003568784.4XP_003568832.2  probable cellulose synthase A catalytic subunit 1 [UDP-forming]

    UniProtKB/TrEMBL
    I1HLC2
    Conserved Domains (3) summary
    PLN02400
    Location:11078
    PLN02400; cellulose synthase
    pfam14569
    Location:3499
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:510827
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold