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LOC100820943 sucrose synthase 4 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100820943, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100820943
Gene description
sucrose synthase 4
Locus tag
BRADI_1g62957v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100820943 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (62379174..62386355)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (62434194..62441370)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene putative GTP diphosphokinase RSH1, chloroplastic Neighboring gene translation initiation factor IF-2 Neighboring gene E3 ubiquitin-protein ligase EL5 Neighboring gene E3 ubiquitin-protein ligase EL5 Neighboring gene uncharacterized LOC112271464

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    62379174..62386355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024457554.1 → XP_024313322.1  sucrose synthase 4 isoform X2

    Conserved Domains (1) summary
    PLN00142
    Location:1 → 798
    PLN00142; sucrose synthase

  2. XM_003557903.4 → XP_003557951.1  sucrose synthase 4 isoform X1

    UniProtKB/TrEMBL
    I1H5N7
    Conserved Domains (3) summary
    PLN00142
    Location:1 → 809
    PLN00142; sucrose synthase
    pfam00534
    Location:570 → 739
    Glycos_transf_1; Glycosyl transferases group 1
    pfam00862
    Location:16 → 553
    Sucrose_synth; Sucrose synthase
Nucleotide Protein Strain
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