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LOC100819978 pectin acetylesterase 3 [ Glycine max (soybean) ]

Gene ID: 100819978, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100819978
Gene description
pectin acetylesterase 3
Locus tag
GLYMA_03G225400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100819978 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (43947745..43953239, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (42775897..42781653, complement)

Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene MYB/HD-like transcription factor Neighboring gene uncharacterized LOC100306030 Neighboring gene uncharacterized protein C24B11.05 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP12 Neighboring gene protein phosphatase 2C 32

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectin acetylesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectin acetylesterase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    43947745..43953239 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006577123.4 → XP_006577186.1  pectin acetylesterase 3 isoform X1

    UniProtKB/TrEMBL
    I1JQY4
    Conserved Domains (1) summary
    pfam03283
    Location:49 → 390
    PAE; Pectinacetylesterase

  2. XM_003521577.4 → XP_003521625.1  pectin acetylesterase 3 isoform X2

    See identical proteins and their annotated locations for XP_003521625.1

    UniProtKB/TrEMBL
    I1JQY5
    Conserved Domains (1) summary
    pfam03283
    Location:49 → 390
    PAE; Pectinacetylesterase
Nucleotide Protein
Heading Accession and Version

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