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LOC100819400 probable xyloglucan 6-xylosyltransferase 5 [ Glycine max (soybean) ]

Gene ID: 100819400, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100819400
Gene description
probable xyloglucan 6-xylosyltransferase 5
Locus tag
GLYMA_17G102400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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Location:
chromosome: 17
Exon count:
1
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 17 NC_038253.2 (8026367..8028458)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 17 NC_038253.1 (8027745..8029546)

Chromosome 17 - NC_038253.2Genomic Context describing neighboring genes Neighboring gene two-component response regulator-like APRR1 Neighboring gene pentatricopeptide repeat-containing protein At5g61370, mitochondrial Neighboring gene uncharacterized LOC102664729 Neighboring gene probable receptor-like protein kinase At5g61350

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038253.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    8026367..8028458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003549640.5 → XP_003549688.1  probable xyloglucan 6-xylosyltransferase 5

    UniProtKB/TrEMBL
    I1MTW4
    Conserved Domains (1) summary
    PLN03182
    Location:28 → 441
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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