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LOC100818287 xyloglucan 6-xylosyltransferase 2-like [ Glycine max (soybean) ]

Gene ID: 100818287, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100818287
Gene description
xyloglucan 6-xylosyltransferase 2-like
Locus tag
GLYMA_15G148000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100818287 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
1
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 15 NC_038251.2 (12167400..12169332, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 15 NC_038251.1 (12177312..12178440, complement)

Chromosome 15 - NC_038251.2Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C 40 Neighboring gene 40S ribosomal protein S21 Neighboring gene probable histone-arginine methyltransferase 1.3 Neighboring gene uncharacterized LOC100819367

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan 6-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan 6-xylosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038251.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    12167400..12169332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041010035.1 → XP_040865969.1  xyloglucan 6-xylosyltransferase 2-like

    Conserved Domains (1) summary
    PLN03182
    Location:1 → 445
    PLN03182; xyloglucan 6-xylosyltransferase; Provisional
Nucleotide Protein
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