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LOC100817476 non-lysosomal glucosylceramidase [ Glycine max (soybean) ]

Gene ID: 100817476, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100817476
Gene description
non-lysosomal glucosylceramidase
Locus tag
GLYMA_10G192400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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Location:
chromosome: 10
Exon count:
18
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 10 NC_038246.2 (42561830..42573382, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 10 NC_038246.1 (42475878..42487344, complement)

Chromosome 10 - NC_038246.2Genomic Context describing neighboring genes Neighboring gene pre-mRNA-processing factor 17 Neighboring gene protein disulfide isomerase pTAC5, chloroplastic Neighboring gene uncharacterized LOC102659661 Neighboring gene uncharacterized LOC100810711

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
non-lysosomal glucosylceramidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038246.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    42561830..42573382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006589264.4 → XP_006589327.1  non-lysosomal glucosylceramidase isoform X1

    UniProtKB/TrEMBL
    A0A0R0EM68, I1LCH2
    Conserved Domains (2) summary
    pfam04685
    Location:534 → 895
    DUF608; Glycosyl-hydrolase family 116, catalytic region
    pfam12215
    Location:102 → 405
    Glyco_hydr_116N; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term

  2. XM_014763280.3 → XP_014618766.1  non-lysosomal glucosylceramidase isoform X2

    UniProtKB/TrEMBL
    A0A0R0EM68
    Conserved Domains (2) summary
    pfam04685
    Location:427 → 788
    DUF608; Glycosyl-hydrolase family 116, catalytic region
    pfam12215
    Location:1 → 301
    Glyco_hydr_116N; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
Nucleotide Protein
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