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LOC100817294 alpha-L-fucosidase 2 [ Glycine max (soybean) ]

Gene ID: 100817294, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100817294
Gene description
alpha-L-fucosidase 2
Locus tag
GLYMA_10G260900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100817294 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 10 NC_038246.2 (48688673..48695115, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 10 NC_038246.1 (48615656..48622117, complement)

Chromosome 10 - NC_038246.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106795008 Neighboring gene alpha-L-fucosidase 2 Neighboring gene uncharacterized LOC100817826 Neighboring gene transcription factor bHLH113 Neighboring gene BSP domain-containing protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-fucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-L-fucosidase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038246.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    48688673..48695115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003536555.5 → XP_003536603.1  alpha-L-fucosidase 2

    See identical proteins and their annotated locations for XP_003536603.1

    UniProtKB/TrEMBL
    A0A0R0EMN4, I1LEI1
    Conserved Domains (1) summary
    pfam14498
    Location:71 → 316
    Glyco_hyd_65N_2; Glycosyl hydrolase family 65, N-terminal domain
Nucleotide Protein
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