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LOC100816963 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic [ Glycine max (soybean) ]

Gene ID: 100816963, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100816963
Gene description
1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic
Locus tag
GLYMA_03G192300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100816963 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (41489877..41507175, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (40322010..40339459, complement)

Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene putative transcriptional activator Neighboring gene growth-regulating factor 3 Neighboring gene ABC transporter G family member 39-like Neighboring gene ABC transporter G family member 39-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in starch metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    41489877..41507175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003521401.4 → XP_003521449.1  1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic isoform X1

    See identical proteins and their annotated locations for XP_003521449.1

    UniProtKB/TrEMBL
    I1JPY7, I1JPY8
    Conserved Domains (1) summary
    PLN02447
    Location:139 → 870
    PLN02447; 1,4-alpha-glucan-branching enzyme

  2. XM_014773902.2 → XP_014629388.1  1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic isoform X2

    UniProtKB/TrEMBL
    A0A0R0KL80, I1JPY8
    Conserved Domains (1) summary
    PLN02447
    Location:41 → 772
    PLN02447; 1,4-alpha-glucan-branching enzyme
Nucleotide Protein
Heading Accession and Version

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