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LOC100816642 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 [ Glycine max (soybean) ]

Gene ID: 100816642, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100816642
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
Locus tag
GLYMA_05G163600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100816642 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (35506252..35515281)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (35472248..35481304)

Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At1g29670 Neighboring gene GDSL esterase/lipase At5g45670-like Neighboring gene exonuclease 1 Neighboring gene elongation factor 1-alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    35506252..35515281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003524170.5 → XP_003524218.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1

    UniProtKB/TrEMBL
    K7KQK7
    Conserved Domains (1) summary
    PLN03064
    Location:1 → 918
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Nucleotide Protein
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