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LOC100814679 probable pectate lyase 5 [ Glycine max (soybean) ]

Gene ID: 100814679, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100814679
Gene description
probable pectate lyase 5
Locus tag
GLYMA_04G191100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100814679 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 4 NC_016091.4 (44994373..44996857, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 4 NC_016091.3 (46174385..46176861, complement)

Chromosome 4 - NC_016091.4Genomic Context describing neighboring genes Neighboring gene Werner Syndrome-like exonuclease Neighboring gene uncharacterized LOC100817505 Neighboring gene protein STICHEL-like 2 Neighboring gene uncharacterized LOC113001458

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016091.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    44994373..44996857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003523073.5 → XP_003523121.1  probable pectate lyase 5

    UniProtKB/TrEMBL
    I1JXE5, I1MUL1
    Conserved Domains (1) summary
    smart00656
    Location:134 → 329
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

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