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LOC100812929 beta-glucosidase 18 [ Glycine max (soybean) ]

Gene ID: 100812929, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100812929
Gene description
beta-glucosidase 18
Locus tag
GLYMA_13G278600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100812929 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (37371921..37376897, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (37972142..37977145, complement)

Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene nuclear/nucleolar GTPase 2 Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene beta-glucosidase 18 Neighboring gene beta-glucosidase 18-like Neighboring gene plant intracellular Ras-group-related LRR protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-glucosidase 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    37371921..37376897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006594721.4 → XP_006594784.1  beta-glucosidase 18 isoform X3

    Conserved Domains (1) summary
    cl23725
    Location:21 → 480
    Glyco_hydro_1; Glycosyl hydrolase family 1

  2. XM_006594720.4 → XP_006594783.1  beta-glucosidase 18 isoform X1

    Conserved Domains (1) summary
    cl23725
    Location:37 → 506
    Glyco_hydro_1; Glycosyl hydrolase family 1

  3. XM_003541801.5 → XP_003541849.2  beta-glucosidase 18 isoform X2

    UniProtKB/TrEMBL
    A0A0R0GVF8
    Conserved Domains (1) summary
    cl23725
    Location:37 → 505
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
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