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LOC100812659 beta-amylase 7 [ Glycine max (soybean) ]

Gene ID: 100812659, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100812659
Gene description
beta-amylase 7
Locus tag
GLYMA_09G260100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmBES1-15
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Genomic context

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See LOC100812659 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (48230455..48236999)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (47841374..47847994)

Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene gibberellin 3-beta-dioxygenase 4-like Neighboring gene uncharacterized LOC102668321 Neighboring gene acyl-coenzyme A thioesterase 8-like Neighboring gene acyl-CoA thioesterase 2-like Neighboring gene transfer RNA valine (anticodon CAC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In silico genome-wide identification and comprehensive characterization of the BES1 gene family in soybean. Li Q, et al. Heliyon, 2019 Jun. PMID 31206092, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in polysaccharide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-amylase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    48230455..48236999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003534516.5 → XP_003534564.1  beta-amylase 7

    UniProtKB/TrEMBL
    K7LG54
    Conserved Domains (1) summary
    cl38930
    Location:1 → 705
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
Heading Accession and Version

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