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LOC100812365 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 [ Glycine max (soybean) ]

Gene ID: 100812365, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100812365
Gene description
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
Locus tag
GLYMA_04G038500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100812365 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 4 NC_016091.4 (3044710..3049924)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 4 NC_016091.3 (3058024..3063212)

Chromosome 4 - NC_016091.4Genomic Context describing neighboring genes Neighboring gene polcalcin Phl p 7 Neighboring gene protein TIC 22, chloroplastic Neighboring gene N66 matrix protein-like Neighboring gene protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016091.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    3044710..3049924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003523553.4 → XP_003523601.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    I1JTI9
    Conserved Domains (1) summary
    cd02537
    Location:300 → 544
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

  2. XM_006577960.3 → XP_006578023.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X2

    Conserved Domains (1) summary
    cd02537
    Location:230 → 474
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
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