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LOC100812170 endoglucanase 5 [ Glycine max (soybean) ]

Gene ID: 100812170, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100812170
Gene description
endoglucanase 5
Locus tag
GLYMA_11G101300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100812170 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
12
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (7645041..7650315)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (7652030..7656732)

Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100811106 Neighboring gene lignin-forming anionic peroxidase Neighboring gene enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic Neighboring gene nucleolin 1 Neighboring gene uncharacterized LOC100812718

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoglucanase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    7645041..7650315
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006590741.4 → XP_006590804.1  endoglucanase 5 isoform X1

    UniProtKB/TrEMBL
    I1LIS9
    Conserved Domains (1) summary
    PLN02340
    Location:3 → 627
    PLN02340; endoglucanase

  2. XM_041006666.1 → XP_040862600.1  endoglucanase 5 isoform X2

    UniProtKB/TrEMBL
    A0A0R0HEX2, A0A0R0HP31
    Conserved Domains (1) summary
    PLN02340
    Location:1 → 540
    PLN02340; endoglucanase
Nucleotide Protein
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