U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100810615 pectate lyase [ Glycine max (soybean) ]

Gene ID: 100810615, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100810615
Gene description
pectate lyase
Locus tag
GLYMA_13G064700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100810615 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (15492878..15495658, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (16424687..16427364, complement)

Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100820412 Neighboring gene uncharacterized LOC100819881 Neighboring gene FACT complex subunit SSRP1 Neighboring gene outer plastidial membrane protein porin

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
pectate lyase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    15492878..15495658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003543678.4 → XP_003543726.1  pectate lyase

    See identical proteins and their annotated locations for XP_003543726.1

    UniProtKB/TrEMBL
    A0A0R0GR01, C6TK37
    Conserved Domains (2) summary
    smart00656
    Location:170 → 364
    Amb_all; Amb_all domain
    pfam04431
    Location:31 → 80
    Pec_lyase_N; Pectate lyase, N-terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases