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LOC100809371 callose synthase 10 [ Glycine max (soybean) ]

Gene ID: 100809371, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100809371
Gene description
callose synthase 10
Locus tag
GLYMA_06G173500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100809371 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
52
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (14537623..14600306)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (14597457..14646717)

Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene kelch domain-containing protein 4 Neighboring gene adenine/guanine permease AZG2 Neighboring gene zinc finger CCCH domain-containing protein 43 Neighboring gene microRNA MIR10186e

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    14537623..14600306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041016564.1 → XP_040872498.1  callose synthase 10 isoform X1

    UniProtKB/TrEMBL
    A0A368UI93
    Conserved Domains (2) summary
    pfam02364
    Location:1029 → 1770
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:349 → 459
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_014776528.3 → XP_014632014.1  callose synthase 10 isoform X2

    UniProtKB/TrEMBL
    A0A0R0JPR5, A0A368UI93
    Conserved Domains (2) summary
    pfam02364
    Location:731 → 1472
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:52 → 161
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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