U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100807850 sulfoquinovosyl transferase SQD2 [ Glycine max (soybean) ]

Gene ID: 100807850, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC100807850
Gene description
sulfoquinovosyl transferase SQD2
Locus tag
GLYMA_18G197600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100807850 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
10
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (47702282..47707382, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (47409830..47414944, complement)

Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene laccase-4 Neighboring gene transcription factor DIVARICATA Neighboring gene uncharacterized LOC100808388 Neighboring gene glycerol-3-phosphate 2-O-acyltransferase 6

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sulfoquinovosyl transferase SQD2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    47702282..47707382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006602580.4 → XP_006602643.1  sulfoquinovosyl transferase SQD2 isoform X1

    UniProtKB/TrEMBL
    A0A0R0FB95
    Conserved Domains (2) summary
    cd03814
    Location:109 → 509
    GT1_like_2; This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can ...
    PLN02871
    Location:53 → 542
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

  2. XM_003552180.5 → XP_003552228.1  sulfoquinovosyl transferase SQD2 isoform X2

    UniProtKB/TrEMBL
    A0A0R0FB95, I1N2U7
    Conserved Domains (1) summary
    PLN02871
    Location:53 → 514
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases