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LOC100806551 mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 [ Glycine max (soybean) ]

Gene ID: 100806551, updated on 25-Jan-2024

Summary

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Gene symbol
LOC100806551
Gene description
mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3
Locus tag
GLYMA_15G094500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
AT1G30000
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Genomic context

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See LOC100806551 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 15 NC_038251.2 (7336790..7340556)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 15 NC_038251.1 (7349795..7353568)

Chromosome 15 - NC_038251.2Genomic Context describing neighboring genes Neighboring gene nuclear intron maturase 1, mitochondrial-like Neighboring gene uncharacterized LOC102662043 Neighboring gene potassium channel KAT1 Neighboring gene uncharacterized LOC100807088 Neighboring gene uncharacterized LOC100807619

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets. Zeng L, et al. New Phytol, 2017 May. PMID 28294342

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038251.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    7336790..7340556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003546037.5 → XP_003546085.1  mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3

    UniProtKB/TrEMBL
    I1M1F3, I1MF37
    Conserved Domains (1) summary
    pfam01532
    Location:145 → 629
    Glyco_hydro_47; Glycosyl hydrolase family 47
Nucleotide Protein
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