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LOC100805472 endoglucanase 25 [ Glycine max (soybean) ]

Gene ID: 100805472, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100805472
Gene description
endoglucanase 25
Locus tag
GLYMA_06G123900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100805472 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (10040907..10044654)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (10079787..10082916)

Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene pathogen-related protein Neighboring gene pathogen-related protein-like Neighboring gene glycolipid transfer protein 3 Neighboring gene uncharacterized LOC100806693

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoglucanase 25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    10040907..10044654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003527922.5 → XP_003527970.1  endoglucanase 25

    UniProtKB/TrEMBL
    A0A0R0JMA2
    Conserved Domains (2) summary
    PLN02420
    Location:81 → 600
    PLN02420; endoglucanase
    cl02959
    Location:115 → 591
    Glyco_hydro_9; Glycosyl hydrolase family 9
Nucleotide Protein
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