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LOC100805007 probable galacturonosyltransferase-like 2 [ Glycine max (soybean) ]

Gene ID: 100805007, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100805007
Gene description
probable galacturonosyltransferase-like 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100805007 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (5323474..5324950)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (5350361..5351695)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene calcium uniporter protein 2, mitochondrial Neighboring gene elongation of fatty acids protein 3-like Neighboring gene uncharacterized protein At2g29880-like Neighboring gene PQ-loop repeat-containing protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    5323474..5324950
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003519858.4 → XP_003519906.2  probable galacturonosyltransferase-like 2

    Conserved Domains (1) summary
    pfam01501
    Location:98 → 362
    Glyco_transf_8; Glycosyl transferase family 8
Nucleotide Protein
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