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PAL2.3 phenylalanine ammonia-lyase 2.3 [ Glycine max (soybean) ]

Gene ID: 100803857, updated on 7-Dec-2023

Summary

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Gene symbol
PAL2.3
Gene description
phenylalanine ammonia-lyase 2.3
Locus tag
GLYMA_13G145000v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmPAL2.3
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Genomic context

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See PAL2.3 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (24847847..24852877, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (25758490..25763520, complement)

Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene adenosine kinase 2-like Neighboring gene isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial Neighboring gene ethylene-insensitive protein 2 Neighboring gene ribonucleoprotein At2g37220, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression quantitative trait loci infer the regulation of isoflavone accumulation in soybean (Glycine max L. Merr.) seed. Wang Y, et al. BMC Genomics, 2014 Aug 13. PMID 25124843, Free PMC Article
  2. Phenylalanine ammonia-lyase2.1 contributes to the soybean response towards Phytophthora sojae infection. Zhang C, et al. Sci Rep, 2017 Aug 3. PMID 28775360, Free PMC Article
  3. Changes in phenylalanine ammonia-lyase activity during xylem differentiation in Coleus and soybean. Rubery PH, et al. Planta, 1969 Mar. PMID 24504715
  4. Modification of L-phenylalanine ammonia-lyase in soybean cell suspension cultures by 2-aminooxyacetate and L-2-aminooxy-3-phenylpropionate. Havir EA. Planta, 1981 Jun. PMID 24302379
  5. Rapid induction of phenylalanine ammonia-lyase and chalcone synthase mRNAs during fungus infection of soybean (Glycine max L.) roots or elicitor treatment of soybean cell cultures at the onset of phytoalexin synthesis. Habereder H, et al. Planta, 1989 Jan. PMID 24212272

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phenylalanine ammonia-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-phenylalanine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phenylalanine ammonia-lyase 2.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357054.1 → NP_001343983.1  phenylalanine ammonia-lyase 2.3

    Status: VALIDATED

    Source sequence(s)
    ACUP04004700
    UniProtKB/TrEMBL
    C6KHU4, I1LZ94
    Conserved Domains (1) summary
    PLN02457
    Location:4 → 716
    PLN02457; phenylalanine ammonia-lyase

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    24847847..24852877 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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