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LOC100803287 alpha-1,4-glucan-protein synthase [UDP-forming] 2-like [ Glycine max (soybean) ]

Gene ID: 100803287, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100803287
Gene description
alpha-1,4-glucan-protein synthase [UDP-forming] 2-like
Locus tag
GLYMA_19G033800v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100803287 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (4342206..4345300, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (4352324..4355417, complement)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene COBRA-like protein 4 Neighboring gene probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 Neighboring gene cytochrome P450 85A Neighboring gene uncharacterized LOC102663087

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Probable UDP-arabinopyranose mutase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001254489.3 → NP_001241418.1  Probable UDP-arabinopyranose mutase 2-like

    Status: VALIDATED

    Source sequence(s)
    ACUP04006639, CX708351, FG990551
    UniProtKB/TrEMBL
    C6TAB7, C6TNP5
    Conserved Domains (1) summary
    PLN03180
    Location:4 → 347
    PLN03180; reversibly glycosylated polypeptide; Provisional

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    4342206..4345300 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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