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LOC100802832 probable pectinesterase 53 [ Glycine max (soybean) ]

Gene ID: 100802832, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100802832
Gene description
probable pectinesterase 53
Locus tag
GLYMA_08G033000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100802832 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (2625837..2629508)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (2628225..2631874)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100527399 Neighboring gene heat shock cognate protein 80-like Neighboring gene protein IQ-DOMAIN 27 Neighboring gene protein DETOXIFICATION 51

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectinesterase 53

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    2625837..2629508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006584745.4 → XP_006584808.1  probable pectinesterase 53

    See identical proteins and their annotated locations for XP_006584808.1

    UniProtKB/TrEMBL
    I1KPW3
    Conserved Domains (1) summary
    PLN02682
    Location:11 → 373
    PLN02682; pectinesterase family protein

  2. XM_003530503.5 → XP_003530551.1  probable pectinesterase 53

    See identical proteins and their annotated locations for XP_003530551.1

    UniProtKB/TrEMBL
    I1KPW3
    Conserved Domains (1) summary
    PLN02682
    Location:11 → 373
    PLN02682; pectinesterase family protein
Nucleotide Protein
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