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LOC100801940 probable galacturonosyltransferase 4 [ Glycine max (soybean) ]

Gene ID: 100801940, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100801940
Gene description
probable galacturonosyltransferase 4
Locus tag
GLYMA_07G269900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100801940 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 7 NC_038243.2 (44585886..44591510)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 7 NC_038243.1 (44265849..44271408)

Chromosome 7 - NC_038243.2Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S15-4 Neighboring gene subtilisin-like protease SBT5.4 Neighboring gene probable E3 ubiquitin-protein ligase EDA40 Neighboring gene snRNA-activating protein complex subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038243.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    44585886..44591510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006584052.4 → XP_006584115.1  probable galacturonosyltransferase 4

    See identical proteins and their annotated locations for XP_006584115.1

    UniProtKB/TrEMBL
    K7L413
    Conserved Domains (1) summary
    PLN02829
    Location:1 → 664
    PLN02829; Probable galacturonosyltransferase

  2. XM_041017447.1 → XP_040873381.1  probable galacturonosyltransferase 4

    UniProtKB/TrEMBL
    K7L413
    Conserved Domains (1) summary
    PLN02829
    Location:1 → 664
    PLN02829; Probable galacturonosyltransferase
Nucleotide Protein
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