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LOC100801729 starch synthase 3, chloroplastic/amyloplastic [ Glycine max (soybean) ]

Gene ID: 100801729, updated on 18-Sep-2024

Summary

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Gene symbol
LOC100801729
Gene description
starch synthase 3, chloroplastic/amyloplastic
Locus tag
GLYMA_13G204700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100801729 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
17
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (31278569..31289044, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (31872599..31883173, complement)

Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene microRNA MIR171o Neighboring gene uncharacterized LOC100796416 Neighboring gene ATP synthase gamma chain, chloroplastic Neighboring gene uncharacterized LOC102661544

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
starch synthase 3, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    31278569..31289044 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014765710.3 → XP_014621196.1  starch synthase 3, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    I1M0Z8, I1MFH5
    Conserved Domains (1) summary
    PLN02316
    Location:118 → 1147
    PLN02316; synthase/transferase

  2. XM_006594358.4 → XP_006594421.1  starch synthase 3, chloroplastic/amyloplastic

    See identical proteins and their annotated locations for XP_006594421.1

    UniProtKB/TrEMBL
    I1M0Z8, I1MFH5
    Conserved Domains (1) summary
    PLN02316
    Location:118 → 1147
    PLN02316; synthase/transferase

  3. XM_003541570.5 → XP_003541618.1  starch synthase 3, chloroplastic/amyloplastic

    See identical proteins and their annotated locations for XP_003541618.1

    UniProtKB/TrEMBL
    I1M0Z8, I1MFH5
    Conserved Domains (1) summary
    PLN02316
    Location:118 → 1147
    PLN02316; synthase/transferase
Nucleotide Protein
Heading Accession and Version

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