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LOC100801633 probable rhamnogalacturonate lyase B [ Glycine max (soybean) ]

Gene ID: 100801633, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100801633
Gene description
probable rhamnogalacturonate lyase B
Locus tag
GLYMA_09G201300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100801633 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
17
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (43434506..43442303, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (42545768..42553646, complement)

Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene probable mannitol dehydrogenase Neighboring gene probable mannitol dehydrogenase Neighboring gene uncharacterized LOC121172855 Neighboring gene lectin 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable rhamnogalacturonate lyase B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    43434506..43442303 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014762300.3 → XP_014617786.1  probable rhamnogalacturonate lyase B

    UniProtKB/TrEMBL
    K7LF02
    Conserved Domains (3) summary
    cd10316
    Location:363 → 460
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    pfam14683
    Location:470 → 659
    CBM-like; Polysaccharide lyase family 4, domain III
    cl15675
    Location:48 → 230
    RGL4_N; N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
Nucleotide Protein
Heading Accession and Version

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