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LOC100800547 probable xyloglucan endotransglucosylase/hydrolase protein 23 [ Glycine max (soybean) ]

Gene ID: 100800547, updated on 7-Dec-2023

Summary

Gene symbol
LOC100800547
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 23
Locus tag
GLYMA_17G065100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

See LOC100800547 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 17 NC_038253.2 (5035077..5036622, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 17 NC_038253.1 (5032709..5034177, complement)

Chromosome 17 - NC_038253.2Genomic Context describing neighboring genes Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 23-like Neighboring gene syringolide-induced protein 19-1-5 Neighboring gene xyloglucan endotransglucosylase/hydrolase family protein Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 23

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038253.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    5035077..5036622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003549440.5XP_003549488.1  probable xyloglucan endotransglucosylase/hydrolase protein 23

    See identical proteins and their annotated locations for XP_003549488.1

    UniProtKB/TrEMBL
    A0A0R0F8D6, C6THE7
    Conserved Domains (1) summary
    cd02176
    Location:20284
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16