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LOC100800194 pectinesterase/pectinesterase inhibitor [ Glycine max (soybean) ]

Gene ID: 100800194, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100800194
Gene description
pectinesterase/pectinesterase inhibitor
Locus tag
GLYMA_17G028600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100800194 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 17 NC_038253.2 (2125072..2127768, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 17 NC_038253.1 (2126320..2129152, complement)

Chromosome 17 - NC_038253.2Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL2 Neighboring gene proliferating cell nuclear antigen-like Neighboring gene multiple organellar RNA editing factor 3, mitochondrial Neighboring gene trophinin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase/pectinesterase inhibitor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038253.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    2125072..2127768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003550494.4 → XP_003550542.1  pectinesterase/pectinesterase inhibitor

    UniProtKB/TrEMBL
    I1MRL0
    Conserved Domains (1) summary
    PLN02217
    Location:1 → 569
    PLN02217; probable pectinesterase/pectinesterase inhibitor
Nucleotide Protein
Heading Accession and Version

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