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LOC100799528 probable xyloglucan endotransglucosylase/hydrolase protein 25 [ Glycine max (soybean) ]

Gene ID: 100799528, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100799528
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 25
Locus tag
GLYMA_18G106500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100799528 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (11855039..11857322)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (11926745..11928945)

Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 Neighboring gene uncharacterized LOC100810866 Neighboring gene zinc finger MYM-type protein 1-like Neighboring gene peroxisomal and mitochondrial division factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    11855039..11857322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003553074.4 → XP_003553122.1  probable xyloglucan endotransglucosylase/hydrolase protein 25

    UniProtKB/TrEMBL
    I1N0W4
    Conserved Domains (1) summary
    cd02176
    Location:24 → 278
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
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