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LOC100798789 mediator of RNA polymerase II transcription subunit 23 [ Glycine max (soybean) ]

Gene ID: 100798789, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100798789
Gene description
mediator of RNA polymerase II transcription subunit 23
Locus tag
GLYMA_09G123500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100798789 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
21
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (30822810..30843914)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (29906942..29928089)

Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene protein translocase subunit SECA2, chloroplastic-like Neighboring gene uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic-like Neighboring gene protein TIFY 6B Neighboring gene uncharacterized LOC102668542

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    30822810..30843914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003533906.5 → XP_003533954.1  mediator of RNA polymerase II transcription subunit 23

    UniProtKB/TrEMBL
    A0A0R0I7I2, I1L2W3
    Conserved Domains (1) summary
    pfam11573
    Location:690 → 1338
    Med23; Mediator complex subunit 23
Nucleotide Protein
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